HAI-WGS Group A Streptococcus - SRA - NCBI

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SRX26202514: HAI-WGS Group A Streptococcus
1 ILLUMINA (Illumina MiSeq) run: 606,433 spots, 286.9M bases, 147.7Mb downloads

Design: WGS by Illumina MiSeq using Nextera DNA Prep library prep

Submitted by: Massachusetts State Public Health Lab

Study: CDC HAI-WGS Group A Streptococcus (GAS)

PRJNA1073550 • SRP494505 • All experiments • All runs

show Abstracthide Abstract

BioProject for whole genome sequence data of Group A Streptococcus (GAS) from healthcare settings.

Sample:

SAMN43930474 • SRS22744915 • All experiments • All runs

Organism: Streptococcus pyogenes

Library:

Name: 2023DK-00018

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 606,433 spots, 286.9M bases, 147.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR30801657	606,433	286.9M	147.7Mb	2024-09-25

ID:: 35358642

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Tssr106248 AND (alive[prop]) (0)
Gene
PREDICTED: Mus musculus regulatory factor X, 5 (influences HLA class II expressi...
PREDICTED: Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant X2, mRNA
gi|1907151304|ref|XM_011240164.4|

Nucleotide
Chain A, NLR family CARD domain-containing protein 4
Chain A, NLR family CARD domain-containing protein 4
gi|940376275|pdb|3JBL|A

Protein
Taxonomy Links for Protein (Select 2038648542) (1)
Taxonomy
Taxonomy Links for PopSet (Select 670941271) (36)
Taxonomy

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